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Test on oldest supported versions during end-to-end CI #4374

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merged 10 commits into from
Jan 5, 2021

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MarcoGorelli
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@MarcoGorelli MarcoGorelli commented Dec 23, 2020

pytest.yml runs all the tests. It's probably a good idea, for that job, to pin all library versions to the earliest possible supported version (as per requirements.txt) to make sure that PyMC3 actually works with those versions


while I was here, this closes #4341

@@ -51,7 +51,7 @@ repos:
- id: pip-from-conda
additional_dependencies: [pyyaml]
entry: python scripts/generate_pip_deps_from_conda.py
files: ^conda-envs/
files: ^conda-envs/environment-dev-py37\.yml$
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It's probably a good idea to have some CI jobs run with different versions of packages, to check PyMC3 works both with the oldest and with the newest versions of its dependencies. So, requirements-dev.txt now has to be generated from just one yml file

@@ -42,7 +42,7 @@ repos:
name: Check no tests are ignored
pass_filenames: false
- id: conda-env-sort
additional_dependencies: [pyyaml]
additional_dependencies: [ruamel.yaml]
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ruamel.yaml preserves comments (which pyyaml destroys) so switching to that

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will do this in a separate PR

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codecov bot commented Dec 31, 2020

Codecov Report

Merging #4374 (3d2ad33) into master (d871b80) will decrease coverage by 0.28%.
The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #4374      +/-   ##
==========================================
- Coverage   88.09%   87.80%   -0.29%     
==========================================
  Files          88       88              
  Lines       14538    14305     -233     
==========================================
- Hits        12807    12561     -246     
- Misses       1731     1744      +13     
Impacted Files Coverage Δ
pymc3/plots/__init__.py 50.00% <0.00%> (-3.07%) ⬇️
pymc3/distributions/discrete.py 92.75% <0.00%> (-2.25%) ⬇️
pymc3/step_methods/hmc/integration.py 89.79% <0.00%> (-2.05%) ⬇️
pymc3/variational/approximations.py 80.19% <0.00%> (-1.74%) ⬇️
pymc3/step_methods/gibbs.py 40.00% <0.00%> (-1.47%) ⬇️
pymc3/tests/helpers.py 60.34% <0.00%> (-1.33%) ⬇️
pymc3/variational/opvi.py 85.27% <0.00%> (-1.25%) ⬇️
pymc3/tests/backend_fixtures.py 78.97% <0.00%> (-0.64%) ⬇️
pymc3/variational/flows.py 93.60% <0.00%> (-0.49%) ⬇️
pymc3/distributions/continuous.py 93.90% <0.00%> (-0.48%) ⬇️
... and 32 more

@MarcoGorelli MarcoGorelli marked this pull request as ready for review December 31, 2020 14:47
@twiecki twiecki merged commit 34b05d8 into pymc-devs:master Jan 5, 2021
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twiecki commented Jan 5, 2021

Thanks @MarcoGorelli!

@MarcoGorelli MarcoGorelli deleted the fixup-ci branch January 5, 2021 14:50
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setup.py says we use nose for testing, but we don't
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